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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_032977
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032977AL135960472098043RH174791143.98    2 AL135960.1, AL390073.5, AL450996.1
S/G/Y/R/B/O NT_032977AL135960472099383RH672841143.98    1 AL135960.1, AL390073.5, AL450996.1
S/G/Y/R/B/O NT_032977AL135960472342693RH128581145.50    2 AL731892.6
S/G/Y/R/B/O NT_032977AL135960472754783RH644681145.91  1167.701 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960472754783RH37714  12377.00  1 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960472810253RH267031144.25    1 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960473085753RH658381146.22    1 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960473113523RH506301146.02  1166.501 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960473201893RH474521145.40    1 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960473202433RH499631146.02  1167.401 AL135960.1, AL390073.5
S/G/Y/R/B/O NT_032977AL135960473427273RH497741146.22  1167.001 AL135960.1
S/G/Y/R/B/O NT_032977AL135960473428523RH691751145.91    1 AL135960.1
S/G/Y/R/B/O NT_032977AL513322474224183RH659311143.77    1 AL513319.3, AL513322.18
S/G/Y/R/B/O NT_032977AL607122474699872RH38054  12377.00  1 AC022754.2, AL513319.3, AL607122.20
S/G/Y/R/B/O NT_032977AL607122475340052RH493321145.91    1 AC022754.2, AL607122.20
S/G/Y/R/B/O NT_032977AL356458475593533WI-10770    1160.801 AC022754.2, AL356458.13
S/G/Y/R/B/O NT_032977AL356458475593533RH496121144.04    1 AC022754.2, AL356458.13
S/G/Y/R/B/O NT_032977AL591415476538853          
S/G/Y/R/B/O NT_032977AL691459478507381RH751371144.88    1 AC013447.4, AL691459.14
S/G/Y/R/B/O NT_032977AC096541478558783RH687231145.91    1 AC013447.4, AC096541.2, AL691459.14
S/G/Y/R/B/O NT_032977AC096541479057573CHLC.GATA72H07    1163.601 AC096541.2
S/G/Y/R/B/O NT_032977AC099679480494783          
S/G/Y/R/B/O NT_032977AL356289481921113RH1039381145.81    1 AL109659.20, AL139427.3, AL356289.6
S/G/Y/R/B/O NT_032977AL109659482514253RH1035301145.81    1 AL109659.20
S/G/Y/R/B/O NT_032977AL109659483387853RH930271145.40    1 AC055887.2, AL109659.20
S/G/Y/R/B/O NT_032977AL359959483863203RH765121143.98    1 AC055887.2, AL359959.9
S/G/Y/R/B/O NT_032977AL356968485276683WI-14342    2952.402 AC007282.4, AL356968.41
S/G/Y/R/B/O NT_032977AL391844486528693WI-11210    1167.601 AL389920.6, AL391844.12
S/G/Y/R/B/O NT_032977AL355809487003793GCT16E08    1162.201 AC023341.3, AL355809.11
S/G/Y/R/B/O NT_032977AC097062488187993RH657311143.87    1 AC023341.3, AC097062.2
S/G/Y/R/B/O NT_032977AC097062488597763RH493341145.81    1 AC097062.2
S/G/Y/R/B/O NT_032977AC097062488922163WI-15759    1169.501 AC097062.2
S/G/Y/R/B/O NT_032977AC097062488922163RH643461143.87    1 AC097062.2
S/G/Y/R/B/O NT_032977AL645507489550523          
S/G/Y/R/B/O NT_032977AC099788490557953          
S/G/Y/R/B/O NT_032977AC092264492024743          
S/G/Y/R/B/O NT_032977AL590432492759153          
S/G/Y/R/B/O NT_032977AL031294493862303WI-4234    1171.001 AC011130.4, AL031294.1
S/G/Y/R/B/O NT_032977AL356916494427173          
S/G/Y/R/B/O NT_032977AL445527495596283          
S/G/Y/R/B/O NT_032977AL356789495953193RH642881148.13  1171.001 AL356789.16
S/G/Y/R/B/O NT_032977AL390023497807123RH642441148.13  1167.301 AL390023.8
S/G/Y/R/B/O NT_032977AC105766498171673RH508641148.33  1171.001 AC105766.2, AL121991.40
S/G/Y/R/B/O NT_032977AL591602498841593          
S/G/Y/R/B/O NT_032977AL645730500319403          
S/G/Y/R/B/O NT_032977AL731870501836423          
S/G/Y/R/B/O NT_032977AL583843501926363          
S/G/Y/R/B/O NT_032977AL592182502914453RH691591148.43    1 AL162257.14, AL592182.6
S/G/Y/R/B/O NT_032977AL596275503751063RH21391148.23  1169.501 AC084169.1
S/G/Y/R/B/O NT_032977AL596275503751063RH32775  12516.00  1 AC084169.1


  NT_032977 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_032977AL596275504082343RH1025641148.33    1 AC026928.2, AL596275.10
S/G/Y/R/B/O NT_032977AL049637505298143RH645961148.23    1 AL049637.43
S/G/Y/R/B/O NT_032977AL049637505310023RH169861147.93    1 AL049637.43
S/G/Y/R/B/O NT_032977AL603746506125013          
S/G/Y/R/B/O NT_032977AC118557507745941RH502771148.23  1167.901 AC118557.1
S/G/Y/R/B/O NT_032977AC091610508828913WI-4397    1169.501 AC091610.3
S/G/Y/R/B/O NT_032977AC091610509490523RH1021631148.33    1 AC091610.3
S/G/Y/R/B/O NT_032977AL359977510350541RH503831148.33  1170.501 AL359977.6
S/G/Y/R/B/O NT_032977AL590455510664053RH937511148.23    1 AL359977.6, AL590455.20
S/G/Y/R/B/O NT_032977AL590455511019113RH665651148.43    1 AL359977.6
S/G/Y/R/B/O NT_032977AL162430513446453RH1067  12547.00  1 AL162430.15
S/G/Y/R/B/O NT_032977AL162430513643783RH643061150.55  1171.601 AL138848.4, AL162430.15, AL356370.2
S/G/Y/R/B/O NT_032977AL162430513810103RH1041291150.86    1 AL162430.15, AL356370.2
S/G/Y/R/B/O NT_032977AL671986514462333RH647911149.93    1 AL359698.10, AL671986.7, AL731898.3
S/G/Y/R/B/O NT_032977AL671986514462973RH505561150.04  1171.601 AL359698.10, AL671986.7, AL731898.3
S/G/Y/R/B/O NT_032977AL671986514471953RH502411149.83  1171.001 AL359698.10, AL671986.7, AL731898.3
S/G/Y/R/B/O NT_032977AL671986514473453RH709771150.17    1 AL359698.10, AL671986.7, AL731898.3
S/G/Y/R/B/O NT_032977AL671986514701843RH677781150.17    1 AL359698.10, AL671986.7, AL731898.3
S/G/Y/R/B/O NT_032977AL671986514986263RH38228  12558.00  1 AL359698.10, AL671986.7, AL731898.3
S/G/Y/R/B/O NT_032977AC104170515308493RH365881149.83    1 AC104170.2, AL138904.4, AL359698.10, AL731898.3
S/G/Y/R/B/O NT_032977AC104170515425673RH657821150.14    1 AC104170.2, AL138904.4, AL359698.10, AL731898.3
S/G/Y/R/B/O NT_032977AC104170515495183RH451611151.08    1 AC104170.2, AL138904.4, AL359698.10, AL731898.3
S/G/Y/R/B/O NT_032977AC104170515495423RH260731143.87    1 AC104170.2, AL138904.4, AL359698.10, AL731898.3
S/G/Y/R/B/O NT_032977AL772260516049251RH485451151.08    1 AC104170.2, AL138904.4, AL391537.4, AL772260.1
S/G/Y/R/B/O NT_032977AL772260517366921RH645001151.08    1 AL391537.4, AL606492.2, AL772260.1, AL831767.1
S/G/Y/R/B/O NT_032977 - RH118961151.08    1 AL096888.30
S/G/Y/R/B/O NT_032977 - WI-11165    1167.001 AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_032977 - RH126221148.03    0  
S/G/Y/R/B/O NT_032977 - WI-18600    1167.001 AC013593.3, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_032977 - RH367301151.08    1 AC012618.7, AC062036.2
S/G/Y/R/B/O NT_032977 - WI-19607    1167.501 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_032977 - RH506911151.03    1 AC025008.2, AL035411.28
S/G/Y/R/B/O NT_032977 - WI-11938    1167.601 AC013593.3, AC025360.1, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_032977 - RH657401150.97    1 AL356793.19
S/G/Y/R/B/O NT_032977 - WI-3019    1167.601 AL137797.9, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_032977 - RH799191150.97    0  
S/G/Y/R/B/O NT_032977 - SGC31961    1169.601 AL359540.19
S/G/Y/R/B/O NT_032977 - WI-21964    1169.601 AL358075.10
S/G/Y/R/B/O NT_032977 - WI-21196    1169.601 AL391596.3, AL391664.6, AL592294.15
S/G/Y/R/B/O NT_032977 - WI-20790    1169.601 AL121602.33, AL157894.5, AL360086.5