Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_004836

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004836	AL133418	233448328	3	RH49709	1	740.49			1	910.40	1	AL133418.4, AL356781.6, AL592290.3
S/G/Y/R/B/O	NT_004836	AL133418	233463215	3	RH63888	1	740.49			1	910.40	1	AL133418.4, AL356781.6, AL592290.3
S/G/Y/R/B/O	NT_004836	AL391994	233540778	2	RH64343	1	740.49			1	910.40	1	AL356781.6, AL391994.26
S/G/Y/R/B/O	NT_004836	AL391994	233540995	2	RH63951	1	741.50			1	910.40	1	AL356781.6, AL391994.26
S/G/Y/R/B/O	NT_004836	AL391994	233638563	2	RH64375	1	744.03			1	910.40	1	AL391994.26
S/G/Y/R/B/O	NT_004836	AL391994	233640135	2	RH91999	1	740.49					1	AL391994.26
S/G/Y/R/B/O	NT_004836	AL357556	233654051	3
S/G/Y/R/B/O	NT_004836	AL672237	233732125	3	RH49893	1	740.49			1	910.40	1	AL672237.1
S/G/Y/R/B/O	NT_004836	AL672237	233732125	3	RH45997	1	744.13					1	AL672237.1
S/G/Y/R/B/O	NT_004836	AL672237	233744659	3	RH70688	1	740.49					1	AC087404.1, AL135928.6, AL672237.1
S/G/Y/R/B/O	NT_004836	AL135928	233745838	3
S/G/Y/R/B/O	NT_004836	AL672238	233843609	3	RH46940	1	740.49					1	AL162611.8, AL672238.1
S/G/Y/R/B/O	NT_004836	AL672238	233847600	3	RH71064	1	740.49	1	9059.00	1	910.40	1	AL162611.8, AL672238.1
S/G/Y/R/B/O	NT_004836	AL583844	233864450	3
S/G/Y/R/B/O	NT_004836	AL390765	233956996	3	RH50110	1	740.49	1	9055.00	1	910.40	1	AC009334.8, AL390765.17
S/G/Y/R/B/O	NT_004836	AL390765	233956996	3	RH68211	1	740.49					1	AC009334.8, AL390765.17
S/G/Y/R/B/O	NT_004836	AL390765	233957694	3	RH1285			1	9051.00			1	AC009334.8, AL390765.17
S/G/Y/R/B/O	NT_004836	AL390765	233982171	3	RH36329	1	740.49					1	AC009334.8, AL390765.17
S/G/Y/R/B/O	NT_004836	AL121997	234026290	3	D1S235					1	910.40	1	AC009334.8, AL121997.7
S/G/Y/R/B/O	NT_004836	AL121997	234026290	3	RH13354	1	740.49	1	9047.00			1	AC009334.8, AL121997.7
S/G/Y/R/B/O	NT_004836	AL121997	234064748	3	WI-2822					1	910.40	1	AC009334.8, AL121997.7
S/G/Y/R/B/O	NT_004836	AL121997	234122171	3	RH50010	1	740.49			1	910.40	1	AL121997.7
S/G/Y/R/B/O	NT_004836	AL121997	234122172	3	RH16370	1	742.60					1	AL121997.7
S/G/Y/R/B/O	NT_004836	AL133286	234206235	3	RH71109	1	740.49	1	9043.00			1	AC013696.2, AL133286.9
S/G/Y/R/B/O	NT_004836	AL133286	234207776	3	RH75671	1	737.64					1	AL133286.9
S/G/Y/R/B/O	NT_004836	AL139161	234271695	3	RH17024	1	740.49					1	AL139161.8
S/G/Y/R/B/O	NT_004836	AL139161	234272222	3	RH45933	1	740.49					1	AL139161.8
S/G/Y/R/B/O	NT_004836	AL139161	234272646	3	RH49904	1	740.49			1	910.40	1	AL139161.8
S/G/Y/R/B/O	NT_004836	AL122018	234407527	3	RH48483	22	126.64					1	AL122018.37
S/G/Y/R/B/O	NT_004836	AL139162	234504288	3	RH47446	1	741.50					1	AC073638.1, AL139162.20
S/G/Y/R/B/O	NT_004836	AL139162	234504918	3	RH64643	1	740.09					1	AC073638.1, AL139162.20
S/G/Y/R/B/O	NT_004836	AL139162	234505691	3	RH12359	1	740.69					1	AC073638.1, AL139162.20
S/G/Y/R/B/O	NT_004836	AL139162	234505908	3	RH12120	1	740.49					1	AC073638.1, AL139162.20
S/G/Y/R/B/O	NT_004836	AL139162	234506725	3	RH103865	1	740.49					1	AC073638.1, AL139162.20
S/G/Y/R/B/O	NT_004836	AL139162	234510590	3	RH64322	1	740.49			1	910.40	1	AC073638.1, AL139162.20
S/G/Y/R/B/O	NT_004836	AL139162	234511536	3	RH64283	1	740.49	1	9035.00	1	910.40	1	AL139162.20
S/G/Y/R/B/O	NT_004836	AL450309	234539088	3	RH78622	1	740.49					1	AC073638.1, AL450309.14
S/G/Y/R/B/O	NT_004836	AL354693	234701432	3	CHLC.GGAA6F06					1	910.40	1	AL354693.6
S/G/Y/R/B/O	NT_004836	AL354693	234754081	3	RH50813	1	740.49			1	910.40	1	AL354693.6, AL390764.6
S/G/Y/R/B/O	NT_004836	AL354693	234763158	3	RH30717			1	9016.00			1	AL354693.6
S/G/Y/R/B/O	NT_004836	AL136105	234780304	3	RH1906			1	452.00			3	AC025240.4, AC115093.4, AL139415.10
S/G/Y/R/B/O	NT_004836	AL136105	234837441	3	RH75683	1	739.07					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234843825	3	RH45332	1	740.49					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234843893	3	RH12368	1	740.49					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234844670	3	WI-12386					1	910.40	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234844670	3	RH63782	1	737.43					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234844821	3	RH50542	1	740.49			1	910.40	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234845234	3	RH68829	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234846452	3	RH63795	1	742.60			1	912.00	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234846453	3	RH11108	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6

NT_004836 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004836	AL136105	234847101	3	RH63832	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847101	3	WI-12648					1	910.30	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847556	3	RH49984	1	742.72			1	912.00	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847556	3	RH78737	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847594	3	RH16350	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847890	3	RH14651			1	8997.00	1	912.00	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847890	3	WI-20466					1	912.00	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847890	3	RH50385	1	738.16					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234847978	3	RH16717	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234848232	3	RH103053	1	742.60					1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL136105	234848479	3	RH50548	1	743.31			1	912.00	1	AL135843.10, AL136105.9, AL359921.13, AL390764.6
S/G/Y/R/B/O	NT_004836	AL359921	234860157	3
S/G/Y/R/B/O	NT_004836	AL359185	235058443	3	RH14035			1	9024.00			1	AL357554.5, AL359185.25
S/G/Y/R/B/O	NT_004836	AL359185	235059364	3	RH11445	1	742.60					1	AL357554.5, AL359185.25
S/G/Y/R/B/O	NT_004836	AL359185	235059989	3	RH50662	1	742.90			1	912.00	1	AL357554.5, AL359185.25
S/G/Y/R/B/O	NT_004836	AL359259	235167161	3	RH78670	1	742.72					1	AC079975.2, AC080149.2, AL359259.18
S/G/Y/R/B/O	NT_004836	AL359259	235193499	3	RH75920	1	744.61					1	AC074231.1, AC079975.2, AC080149.2, AL359259.18
S/G/Y/R/B/O	NT_004836	AL359259	235195873	3	RH70474	1	744.09					1	AC074231.1, AC079975.2, AC080149.2, AL359259.18
S/G/Y/R/B/O	NT_004836	AL359259	235195980	3	RH67102	1	744.09					1	AC074231.1, AC079975.2, AC080149.2, AL359259.18
S/G/Y/R/B/O	NT_004836	AL359259	235196219	3	RH25968	1	742.80					1	AC074231.1, AC079975.2, AC080149.2, AL359259.18
S/G/Y/R/B/O	NT_004836	AL359259	235287293	3	WI-2976					1	913.50	1	AC016512.3, AC074231.1, AC079975.2, AC080149.2, AL359259.18
S/G/Y/R/B/O	NT_004836	AL596133	235310077	3
S/G/Y/R/B/O	NT_004836	AL391809	235408237	3	RH50906	1	743.51			1	912.00	1	AL356582.4, AL391809.21
S/G/Y/R/B/O	NT_004836	AL356773	235503476	3
S/G/Y/R/B/O	NT_004836	AL445473	235618564	3	AFMA045ZC5					1	913.50	1	AC007990.2, AL445473.7
S/G/Y/R/B/O	NT_004836	AL445473	235658339	3	WI-14972					1	913.50	1	AL445473.7
S/G/Y/R/B/O	NT_004836	AL445473	235658339	3	RH64224	1	737.43					1	AL445473.7
S/G/Y/R/B/O	NT_004836	AL442065	235791648	3
S/G/Y/R/B/O	NT_004836	AL365332	235894210	3
S/G/Y/R/B/O	NT_004836	AL513130	236058517	3
S/G/Y/R/B/O	NT_004836	AL359924	236128780	3	RH50893	1	743.72			1	913.50	1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236128780	3	RH36175	1	744.09					1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236128800	3	RH68322	1	744.09					1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236128872	3	RH14619			1	8403.00			1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236129566	3	RH71014	1	744.09			1	913.50	1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236129568	3	RH71121	1	744.09					1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236129621	3	RH16765	1	744.09					1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL359924	236129621	3	RH75184	1	744.13					1	AL358212.7, AL359924.13
S/G/Y/R/B/O	NT_004836	AL590396	236223801	3	RH103683	1	744.09					1	AC024498.2, AL358212.7, AL590396.13
S/G/Y/R/B/O	NT_004836	AL590396	236310799	3	AFMA044XC9					1	910.80	1	AL590396.13
S/G/Y/R/B/O	NT_004836	AL359203	236316224	3
S/G/Y/R/B/O	NT_004836	AL357501	236435586	3
S/G/Y/R/B/O	NT_004836	AL596178	236480108	3
S/G/Y/R/B/O	NT_004836	AL356010	236558031	3
S/G/Y/R/B/O	NT_004836	AL360010	236707213	3
S/G/Y/R/B/O	NT_004836	AL359551	236730514	3
S/G/Y/R/B/O	NT_004836		-		RH1182			1	9005.00			1	AL590133.32
S/G/Y/R/B/O	NT_004836		-		RH1392			1	9006.00			1	AL391069.11, AL592111.3
S/G/Y/R/B/O	NT_004836		-		RH1779			1	9006.00			1	AC027069.2, AL355860.12
S/G/Y/R/B/O	NT_004836		-		RH8645			1	9005.00			1	AC027069.2, AL355860.12

NT_004836 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004836		-		RH8763			1	9024.00			1		AC058783.22, AC058783.22, AL121602.33, AL122001.32, AL157894.5, AL360086.5, AL450998.19