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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_034410
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_034410AL5133432013129423RH24881673.93  1831.401 AL513343.21
S/G/Y/R/B/O NT_034410AL5133432013129423RH419  17822.00  1 AL513343.21
S/G/Y/R/B/O NT_034410AC1144022014266173RH8987  17813.00  1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014286793RH251391674.01    1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014287393RH646451674.01    1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014289353RH646181674.01    1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014300913RH638441674.01    1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014300913RH269611673.73    1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014305013RH497931674.01  1831.401 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014305173RH105021674.01    1 AC114402.2, AL390207.8
S/G/Y/R/B/O NT_034410AC1144022014871633RH1024761674.01    1 AC114402.2
S/G/Y/R/B/O NT_034410AC1144022015407133RH669961674.01    1 AC114402.2
S/G/Y/R/B/O NT_034410AC1185542015579073RH690971674.01    1 AC118554.2
S/G/Y/R/B/O NT_034410AC0966452015906791          
S/G/Y/R/B/O NT_034410AC0732512017512611          
S/G/Y/R/B/O NT_034410AL5921462017963573WI-10728    1831.401 AL592146.8
S/G/Y/R/B/O NT_034410AL5921462018205283RH767531665.63    1 AL592146.8
S/G/Y/R/B/O NT_034410AL5921462018242013RH507541673.83  1831.401 AC073251.2
S/G/Y/R/B/O NT_034410AL5921462018490393RH110641674.01    1 AC073251.2, AL592146.8
S/G/Y/R/B/O NT_034410AL5921462018524643RH110631674.01    1 AC073251.2, AL592146.8
S/G/Y/R/B/O NT_034410AL5921142018834803RH712321673.63    1 AL592114.13
S/G/Y/R/B/O NT_034410AL5921142018834903RH760181662.79    1 AL592114.13
S/G/Y/R/B/O NT_034410AL5921142018855493RH507421674.0117818.001831.401 AL592114.13
S/G/Y/R/B/O NT_034410AL5921142018856013RH359531674.01    1 AL592114.13
S/G/Y/R/B/O NT_034410AL5921142018913583RH685151673.73    1 AL592114.13, AL627202.5
S/G/Y/R/B/O NT_034410AL5921142019119913RH638241673.73  1829.901 AL592114.13, AL627202.5
S/G/Y/R/B/O NT_034410AL5921142019120623RH169611673.93    1 AL592114.13, AL627202.5
S/G/Y/R/B/O NT_034410AL5921142019127353RH646351674.01    1 AL592114.13, AL627202.5
S/G/Y/R/B/O NT_034410AL5921142019143933RH659741674.01    1 AL592114.13, AL627202.5
S/G/Y/R/B/O NT_034410AL5921142019475863RH124691673.73    1 AL592114.13, AL627202.5
S/G/Y/R/B/O NT_034410AL5921142019674973RH749901672.28    1 AL592114.13
S/G/Y/R/B/O NT_034410AL6064892020509081AFMA130XC1    1830.001 AC048369.2
S/G/Y/R/B/O NT_034410AL6064892020987771RH177951674.01    2 AC048369.2, AC090439.8, AL606489.21
S/G/Y/R/B/O NT_034410AL6064892021004321RH781311673.73    1 AC048369.2, AL606489.21
S/G/Y/R/B/O NT_034410AL6064892021180361RH638081673.93  1830.001 AC048369.2, AL606489.21
S/G/Y/R/B/O NT_034410AL6064892021181151RH261671673.73    1 AC048369.2, AL606489.21
S/G/Y/R/B/O NT_034410AL6064892021184051RH698401674.01    1 AC048369.2, AL606489.21
S/G/Y/R/B/O NT_034410AL5123062022205933RH647291673.83    1 AL450424.3
S/G/Y/R/B/O NT_034410AL5123062022467213RH803881672.39    1 AC021462.3, AL512306.16
S/G/Y/R/B/O NT_034410AL5123062022522233RH506841674.01  1831.401 AC021462.3, AL450424.3, AL512306.16
S/G/Y/R/B/O NT_034410AL5123062022531233RH642211673.63  1829.901 AL512306.16
S/G/Y/R/B/O NT_034410AL5123062023124133RH358411674.01    1 AC021462.3, AL512306.16
S/G/Y/R/B/O NT_034410AL5123062023124413RH499341672.91    1 AC021462.3, AL512306.16
S/G/Y/R/B/O NT_034410AL5123062023124413WI-22006    1826.301 AC021462.3, AL512306.16
S/G/Y/R/B/O NT_034410AL5123062023251123RH463241672.28    1 AC021462.3, AL512306.16
S/G/Y/R/B/O NT_034410AL1617932023712603RH426531674.01  1831.401 AL355486.14
S/G/Y/R/B/O NT_034410AC0966752025515013RH492451675.75    1 AC096675.2
S/G/Y/R/B/O NT_034410AC0966752025652383RH931421675.75    1 AC096675.2
S/G/Y/R/B/O NT_034410AC0966752025941143RH647551675.75    1 AC096675.2
S/G/Y/R/B/O NT_034410AL3918222026854773RH990971675.75    1 AC018373.3, AL359927.4, AL391822.12


  NT_034410 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_034410AL3918222027135403RH501531673.63    1 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027135403WI-20686    1826.101 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027148703RH184771674.04    1 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027165273RH122471677.58    1 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027171103RH710491678.0717938.001833.101 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027173383RH283991678.07    1 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027177463RH251051675.65    1 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL3918222027178123RH645651675.75    1 AC018373.3, AL359927.4, AL391822.12
S/G/Y/R/B/O NT_034410AL5838322027689633RH498761677.86  1833.001 AC018373.3, AL359927.4, AL583832.14
S/G/Y/R/B/O NT_034410AL5838322027696703RH708751678.27    1 AC018373.3, AL359927.4, AL583832.14
S/G/Y/R/B/O NT_034410AL5838322027699503RH643261678.07  1832.901 AC018373.3, AL359927.4, AL583832.14
S/G/Y/R/B/O NT_034410AL5838322027727903RH637801677.58  1833.101 AC018373.3, AL359927.4, AL583832.14
S/G/Y/R/B/O NT_034410AL5838322027826963RH710661677.5817943.001832.901 AC018373.3, AL359927.4, AL583832.14
S/G/Y/R/B/O NT_034410AC0934222028663801RH647461677.47    1 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028665711RH368591678.07    1 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028885251RH643271678.07  1832.901 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028885561RH506901678.17  1833.201 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028886381RH501691677.86  1833.101 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028888981RH686791677.47    1 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028890761RH755621677.47    1 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028899901RH693981673.93    1 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028925291RH692171677.47    1 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028926501RH498561677.47  1833.101 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0934222028932601RH642301677.58  1833.101 AC018711.4, AC093422.1
S/G/Y/R/B/O NT_034410AC0989332029681443RH645061682.41    1 AC018711.4, AC093422.1, AC098933.2
S/G/Y/R/B/O NT_034410AC0989332029682193RH499951680.74  1835.301 AC018711.4, AC093422.1, AC098933.2
S/G/Y/R/B/O NT_034410AC0989332029682803RH105511680.90    1 AC018711.4, AC093422.1, AC098933.2
S/G/Y/R/B/O NT_034410AC0989332029863363RH465101680.90    1 AC018711.4, AC098933.2
S/G/Y/R/B/O NT_034410AC0989332029971953RH681231680.90    1 AC098933.2
S/G/Y/R/B/O NT_034410AC0989332029973063RH939411680.90    1 AC098933.2
S/G/Y/R/B/O NT_034410AC0989332030107913RH654551680.90    1 AC098933.2
S/G/Y/R/B/O NT_034410AC0989332030312333RH498881680.90  1835.301 AC098933.2
S/G/Y/R/B/O NT_034410AC0989332030316523RH14649  17954.001836.101 AC098933.2
S/G/Y/R/B/O NT_034410AC0989332030318273RH645871680.90    1 AC098933.2
S/G/Y/R/B/O NT_034410AC0989332030765193RH925661680.90    1 AC098933.2, AC098936.2
S/G/Y/R/B/O NT_034410AC0989362031169513RH809071680.90    1 AC098936.2, AL357131.21
S/G/Y/R/B/O NT_034410AC0989362031302133RH939421680.90    1 AC098936.2, AL357131.21
S/G/Y/R/B/O NT_034410AC0989362031534463RH642851680.90  1835.401 AC098936.2, AL357131.21
S/G/Y/R/B/O NT_034410AC0989362031844273RH491451680.90  1836.101 AC098936.2, AL357131.21
S/G/Y/R/B/O NT_034410AC0989362031844873RH1013  17959.00  1 AC098936.2, AL357131.21
S/G/Y/R/B/O NT_034410AL3571312032276531RH801871680.74    1 AL357131.21
S/G/Y/R/B/O NT_034410AC0965332032517361RH265251682.48    1 AC096533.1, AL357131.21
S/G/Y/R/B/O NT_034410AC0965332034798671RH479591682.41    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034871671RH672601682.48    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034884091RH639481682.48  1838.501 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034884091RH102071682.48    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034884191RH166811682.48    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034911681RH644231682.4817978.001837.401 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034911881RH646051682.41    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034913031RH251071682.48    1 AC096533.1


  NT_034410 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_034410AC0965332034929201RH643631682.37  1838.501 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034929201RH257251682.48    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034982541RH696961682.37    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332034982761RH786621682.31    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035004791RH711591682.37    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035015071RH642271682.48  1838.501 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035064171RH9073  18001.00  1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035096901RH117261682.48    1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035097361RH8647  17978.00  1 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035100751RH502811682.48  1838.501 AC096533.1
S/G/Y/R/B/O NT_034410AC0965332035224691RH1028221681.48    1 AC096533.1
S/G/Y/R/B/O NT_034410AC1196732036583531RH702731682.48    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AC1196732036795391RH505011682.37  1837.101 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AC1196732036805351RH267151681.96    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AC1196732036812271RH646861682.41    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AC1196732036905481WI-4347    1864.301 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036041111RH683921683.72    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036043611RH499031682.48  1838.501 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036045541RH646241682.41    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036061651RH988191682.48    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036069431RH710551682.48  1838.501 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036075801RH644161682.37  1837.401 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036079251RH710511682.37  1836.701 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036107461RH98321682.48    1 AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036215281RH711221682.37    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL3597022036365161RH491391682.41    1 AC119673.1, AL359702.4
S/G/Y/R/B/O NT_034410AL7139652037891703RH801791682.06    2 AL360009.8, AL451008.5, AL713965.10
S/G/Y/R/B/O NT_034410 - RH1018441673.63    2 AC011557.6, AC024182.2
S/G/Y/R/B/O NT_034410 - RH1895  17972.00  0  
S/G/Y/R/B/O NT_034410 - RH1024501682.48    0  
S/G/Y/R/B/O NT_034410 - RH1034131682.37    0  
S/G/Y/R/B/O NT_034410 - RH1044831682.48    0  
S/G/Y/R/B/O NT_034410 - RH175341682.41    0  
S/G/Y/R/B/O NT_034410 - RH180641673.83    0  
S/G/Y/R/B/O NT_034410 - RH644741682.41  1837.100  
S/G/Y/R/B/O NT_034410 - RH503181673.83    1 AC005366.1, AC008781.7
S/G/Y/R/B/O NT_034410 - STSG-9971    1838.000  
S/G/Y/R/B/O NT_034410 - RH919691682.48    0  
S/G/Y/R/B/O NT_034410 - RH992171674.01    0