Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_021937

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_021937	AL691449	9715046	1	RH48713	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9750914	1	RH26180	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9750947	1	RH14260			1	463.00			1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751307	1	RH63840	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751310	1	RH50274	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751310	1	NIB2114					1	54.30	1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751312	1	RH63871	1	32.73			1	1.60	1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751325	1	RH49937	1	43.61					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751325	1	WI-16255					1	4.10	1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751325	1	RH50040	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751325	1	WI-16324					1	25.70	1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751367	1	RH11792	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9751443	1	RH11473	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL691449	9771810	1	RH15907	1	41.96					1	AL691449.10
S/G/Y/R/B/O	NT_021937	AL357140	9869691	2	RH12006	1	41.96					1	AC013728.4, AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9869751	2	RH14623			1	463.00			1	AC013728.4, AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9870267	2	RH78141	1	41.96					1	AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9871522	2	RH64194	1	41.96					1	AC013728.4, AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9871522	2	WI-16661					1	54.30	1	AC013728.4, AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9947901	2	RH91273	1	41.96					1	AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9948307	2	RH14660			1	480.00			1	AC013728.4, AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9988117	2	RH8768			1	480.00			1	AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9988117	2	RH104520	1	33.57					1	AL357140.31
S/G/Y/R/B/O	NT_021937	AL357140	9988117	2	RH1769			1	480.00			1	AL357140.31
S/G/Y/R/B/O	NT_021937	AL603962	9992016	3
S/G/Y/R/B/O	NT_021937	AL590639	10022273	3
S/G/Y/R/B/O	NT_021937	AL096841	10192409	3	WI-14873					1	54.00	1	AL096841.6, AP003163.1
S/G/Y/R/B/O	NT_021937	AL096841	10192409	3	RH64217	1	771.97					1	AL096841.6, AP003163.1
S/G/Y/R/B/O	NT_021937	AL096841	10201454	3	RH64315	1	41.85	1	499.00			1	AL096841.6, AP003163.1
S/G/Y/R/B/O	NT_021937	AL096841	10201454	3	SGC30343					1	0.00	1	AL096841.6, AP003163.1
S/G/Y/R/B/O	NT_021937	AL096841	10202360	3	RH17272	1	41.85					1	AL096841.6, AP003163.1
S/G/Y/R/B/O	NT_021937	AL096841	10208405	3	RH45100	1	41.85					1	AL096841.6, AL358013.19, AP003163.1
S/G/Y/R/B/O	NT_021937	AL358013	10320267	3	RH79628	1	41.75					1	AL358013.19, AP003164.1
S/G/Y/R/B/O	NT_021937	AL358013	10327533	3	RH64239	1	43.61	1	499.00			1	AL358013.19, AP003164.1
S/G/Y/R/B/O	NT_021937	AL358013	10327533	3	SGC30747					1	54.90	1	AL358013.19, AP003164.1
S/G/Y/R/B/O	NT_021937	AL358013	10329292	3	RH94196	1	43.61					1	AL358013.19, AP003164.1
S/G/Y/R/B/O	NT_021937	AL358013	10329577	3	RH94028	1	43.61					1	AL358013.19, AP003164.1
S/G/Y/R/B/O	NT_021937	AL358013	10329715	3	RH80337	1	43.10					1	AL358013.19, AP003164.1
S/G/Y/R/B/O	NT_021937	AL139424	10379752	3	RH14634			1	505.00			1	AL139424.21, AP001098.3, AP003161.1, AP003164.1
S/G/Y/R/B/O	NT_021937	AL139424	10402737	3	RH1359			1	508.00			1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10402752	3	RH63919	1	43.20					1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10402752	3	WI-6175					1	54.00	1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10402826	3	RH9882	1	43.51					1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10440909	3	RH66785	1	43.20					1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10441038	3	RH39270	18	183.30					1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10441082	3	RH70785	1	43.20					1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL139424	10441255	3	RH63772	1	43.61					1	AL139424.21, AP001098.3, AP003161.1
S/G/Y/R/B/O	NT_021937	AL354956	10477949	3	RH79256	1	43.61					1	AL354956.13, AP001098.3
S/G/Y/R/B/O	NT_021937	AL354956	10482635	3	RH70411	1	43.61					1	AL162405.3, AL354956.13, AP001098.3, AP003162.1
S/G/Y/R/B/O	NT_021937	AL354956	10518323	3	SGC38258					1	40.30	1	AL162405.3, AL354956.13, AL591403.10, AP001098.3, AP003162.1

NT_021937 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_021937	AL354956	10518323	3	RH50853	1	0.00					1	AL162405.3, AL354956.13, AL591403.10, AP001098.3, AP003162.1
S/G/Y/R/B/O	NT_021937	AL591403	10535416	3	D1S244					1	54.00	1	AL162405.3, AL591403.10, AP003162.1
S/G/Y/R/B/O	NT_021937	AL591403	10535416	3	RH13385	1	45.63	1	508.00			1	AL162405.3, AL591403.10, AP003162.1
S/G/Y/R/B/O	NT_021937	AL591403	10568591	3	RH67799	1	45.63					1	AL162405.3, AL591403.10, AP003162.1
S/G/Y/R/B/O	NT_021937	AL139423	10651877	3	RH12067	1	47.85					1	AC022983.3, AL139423.25, AL365399.6
S/G/Y/R/B/O	NT_021937	AL139423	10732562	3	RH64291	1	47.85			1	48.90	1	AL139423.25, AL365399.6
S/G/Y/R/B/O	NT_021937	AL157717	10756110	3
S/G/Y/R/B/O	NT_021937	AL031984	10765267	3
S/G/Y/R/B/O	NT_021937	AL358492	10948887	3	CHLC.ATA9B08					1	49.40	1	AL139253.3
S/G/Y/R/B/O	NT_021937	AL713997	11016497	1
S/G/Y/R/B/O	NT_021937	AL109811	11046355	3	RH49835	1	47.85					1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11046355	3	WI-13425					1	54.30	1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11051442	3	SGC34104					1	48.00	1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11051442	3	RH33100			1	612.00			1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11051442	3	RH64314	1	31.89					1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11075962	3	RH70746	1	49.58					1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11090781	3	RH78022	1	49.58					1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11101924	3	RH64370	1	49.58					1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11101924	3	RH14652			1	612.00	1	54.30	1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11127758	3	RH63897	1	49.58			1	49.80	1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL109811	11128494	3	RH8308			1	606.00			1	AL109811.40
S/G/Y/R/B/O	NT_021937	AL391561	11153172	3	RH46207	1	49.58					1	AL359082.16, AL391561.20
S/G/Y/R/B/O	NT_021937	AL049653	11216730	3	RH46072	1	49.58					1	AL049653.7
S/G/Y/R/B/O	NT_021937	AL049653	11272898	3	RH47621	1	53.42					1	AL049653.7, AL357135.4
S/G/Y/R/B/O	NT_021937	AL049653	11274079	3	RH45419	1	49.58					1	AL049653.7, AL357135.4
S/G/Y/R/B/O	NT_021937	AL031291	11294531	3	RH78828	1	49.58					1	AL031291.3, AL357135.4
S/G/Y/R/B/O	NT_021937	AL031291	11309233	3	RH45740	1	49.58					1	AL031291.3, AL357135.4
S/G/Y/R/B/O	NT_021937	AL031291	11319039	3	RH25933	1	51.41					1	AL031291.3, AL357135.4
S/G/Y/R/B/O	NT_021937	AL031291	11320646	3	RH49932	1	49.58					1	AL031291.3, AL357135.4
S/G/Y/R/B/O	NT_021937	AL031291	11320646	3	TIGR-A004Y04					1	54.30	1	AL031291.3, AL357135.4
S/G/Y/R/B/O	NT_021937	AL592314	11406578	3
S/G/Y/R/B/O	NT_021937	AL590989	11448127	3	RH49298	1	47.75					1	AC016978.3, AL590989.15
S/G/Y/R/B/O	NT_021937	AL590989	11448127	3	RH30653			1	580.00			1	AC016978.3, AL590989.15
S/G/Y/R/B/O	NT_021937	AL031735	11527095	3	RH64382	1	49.58			1	49.80	1	AC016978.3, AL031735.9
S/G/Y/R/B/O	NT_021937	AL031731	11669628	3	RH50112	1	49.58			1	47.40	1	AL031731.44, AL611948.4
S/G/Y/R/B/O	NT_021937	AL031731	11678248	3	RH104184	1	49.58					1	AL031731.44, AL611948.4
S/G/Y/R/B/O	NT_021937	AL031731	11682985	3	RH64219	1	49.58			1	46.80	1	AL031731.44
S/G/Y/R/B/O	NT_021937	AL031731	11683209	3	RH49845	1	49.58			1	49.70	1	AL031731.44
S/G/Y/R/B/O	NT_021937	AL031731	11683272	3	RH25663	1	51.41					1	AL031731.44
S/G/Y/R/B/O	NT_021937	AL031731	11683363	3	IB3322					1	54.30	1	AL031731.44, AL611948.4
S/G/Y/R/B/O	NT_021937	AL031731	11695722	3	RH80622	1	47.85					1	AL031731.44, AL611948.4
S/G/Y/R/B/O	NT_021937	AL512423	11737301	1
S/G/Y/R/B/O	NT_021937		-		RH64696	1	49.58					0
S/G/Y/R/B/O	NT_021937		-		RH44136	1	49.58					0
S/G/Y/R/B/O	NT_021937		-		RH44595	1	49.58					0	AC025001.3
S/G/Y/R/B/O	NT_021937		-		RH64435	1	49.58			1	42.20	0
S/G/Y/R/B/O	NT_021937		-		RH50253	1	41.96					0
S/G/Y/R/B/O	NT_021937		-		GCT3H01					1	43.50	1	AC025001.3, AL021155.1
S/G/Y/R/B/O	NT_021937		-		SGC33684					1	47.60	0
S/G/Y/R/B/O	NT_021937		-		WI-14635					1	48.00	1	AC024999.2, AC074234.5, AL031277.1

NT_021937 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_021937	-	RH50356	1	51.21	1	556.00	1	48.30	0	AC025001.3
S/G/Y/R/B/O	NT_021937	-	RH63770	1	49.07					0	AC025001.3
S/G/Y/R/B/O	NT_021937	-	WI-14621					1	48.60	1	AL359771.27
S/G/Y/R/B/O	NT_021937	-	RH64189	1	49.07					0	AC025001.3
S/G/Y/R/B/O	NT_021937	-	WI-14195					1	49.30	1	AL358252.13
S/G/Y/R/B/O	NT_021937	-	RH67330	1	47.65					0	AC025001.3
S/G/Y/R/B/O	NT_021937	-	WI-13518					1	49.30	1	AL357873.17, AL359086.9
S/G/Y/R/B/O	NT_021937	-	RH71349	1	51.21					0
S/G/Y/R/B/O	NT_021937	-	WI-11662					1	50.00	0