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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_029223
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029223AC099562568682693CHLC.GATA7A05.219    1180.501 AC099562.2
S/G/Y/R/B/O NT_029223AC099562568774333RH917981156.58    1 AC099562.2
S/G/Y/R/B/O NT_029223AC099562568785713RH33406  12767.00  1 AC099562.2
S/G/Y/R/B/O NT_029223AC099562568787883RH251081156.99    1 AC099562.2
S/G/Y/R/B/O NT_029223AC099562569201473WI-4323    1178.201 AC099562.2, AL390015.5
S/G/Y/R/B/O NT_029223AC099562569327413WI-4109    1174.801 AC099562.2
S/G/Y/R/B/O NT_029223AC099562569590943RH502921156.99  1177.701 AC099562.2, AC099789.2
S/G/Y/R/B/O NT_029223AC099562569616743RH166621153.53    1 AC099562.2, AC099789.2
S/G/Y/R/B/O NT_029223AC099562569616833RH933601152.63    1 AC099562.2, AC099789.2
S/G/Y/R/B/O NT_029223AC099789570291763WI-5716    1177.801 AC013675.2, AC099789.2
S/G/Y/R/B/O NT_029223AC099789570903313RH644651156.5812767.001177.701 AC099789.2, AL035705.22
S/G/Y/R/B/O NT_029223AC099789570962413RH98121153.53    1 AC099789.2, AL035705.22
S/G/Y/R/B/O NT_029223AC099789570970353RH756701156.99    1 AC099789.2, AL035705.22
S/G/Y/R/B/O NT_029223AC099789570975283RH646791156.48    1 AC099789.2, AL035705.22
S/G/Y/R/B/O NT_029223AL035705571081933          
S/G/Y/R/B/O NT_029223AL360295571666943          
S/G/Y/R/B/O NT_029223AL121998572575113RH647751156.99    1 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573003333RH8299  12767.00  1 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573003333RH503601153.45  1174.801 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573004633RH176691156.99    1 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573018593RH33522  12767.00  1 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573143953RH362841153.53    1 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573187013RH697761156.99    1 AL121998.7
S/G/Y/R/B/O NT_029223AL121998573316353RH504581156.99  1177.801 AL121998.7, AL365177.5
S/G/Y/R/B/O NT_029223AL121998573401833RH761521156.99    1 AL121998.7
S/G/Y/R/B/O NT_029223AL161740573774013RH638491156.99    1 AL161740.16
S/G/Y/R/B/O NT_029223AL161740573785713RH251921156.99    1 AL161740.16
S/G/Y/R/B/O NT_029223AL354883574268773RH504891156.4812751.001179.701 AL354883.14
S/G/Y/R/B/O NT_029223AL354883574270153RH163351156.99    1 AL354883.14
S/G/Y/R/B/O NT_029223AL354883574976073RH797171156.99    1 AL138779.7, AL157907.3, AL354883.14
S/G/Y/R/B/O NT_029223AL354883575250333RH31570  12755.00  1 AL138779.7, AL157907.3
S/G/Y/R/B/O NT_029223AL080278575884173WI-3682    1177.601 AC027234.2, AL080278.7, AL157907.3
S/G/Y/R/B/O NT_029223AL080278576100653RH492961156.5812763.00  1 AC027234.2
S/G/Y/R/B/O NT_029223AL139219576639973WI-4068    1177.901 AC009278.4, AC027234.2, AL139219.12
S/G/Y/R/B/O NT_029223AL139219576807563RH639241156.99    1 AC009278.4, AC027234.2, AL139219.12
S/G/Y/R/B/O NT_029223AL390243577088903          
S/G/Y/R/B/O NT_029223AL355004577977353AFMA230VH5    1184.301 AC009278.4, AL355004.11
S/G/Y/R/B/O NT_029223AL442223578060943          
S/G/Y/R/B/O NT_029223AL359739579818853RH167361153.63    1 AL359739.8
S/G/Y/R/B/O NT_029223AL663085580270613          
S/G/Y/R/B/O NT_029223AL627090580562023          
S/G/Y/R/B/O NT_029223AL137855581288853RH647181156.58    1 AL137855.10
S/G/Y/R/B/O NT_029223AL137855581558563D1S476    1177.601 AL137855.10
S/G/Y/R/B/O NT_029223AL137855581558563RH136161158.9312797.00  1 AL137855.10
S/G/Y/R/B/O NT_029223AL137855581819213WI-4411    1177.901 AL137855.10
S/G/Y/R/B/O NT_029223AL109944582408193RH14616  12782.00  1 AL109944.19
S/G/Y/R/B/O NT_029223AL109944582408703RH782131158.83    1 AL109944.19
S/G/Y/R/B/O NT_029223AL109944582631133RH986811158.83    1 AL109944.19, AL390761.4
S/G/Y/R/B/O NT_029223AL391826583704713RH506831157.54    1 AL139221.4, AL390761.4, AL391826.7
S/G/Y/R/B/O NT_029223AL391826583704713WI-14549    1175.801 AL139221.4, AL390761.4, AL391826.7


  NT_029223 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029223AL391826583704713RH496181158.83  1188.101 AL139221.4, AL390761.4, AL391826.7
S/G/Y/R/B/O NT_029223AL445193584031063          
S/G/Y/R/B/O NT_029223AL365367584698083          
S/G/Y/R/B/O NT_029223AL357373585584823          
S/G/Y/R/B/O NT_029223AC104464586774193RH492431161.9512807.00  1 AC104464.2
S/G/Y/R/B/O NT_029223AL109845588581973WI-5588    1199.301 AC027052.3, AL109845.8, AL359879.4
S/G/Y/R/B/O NT_029223AL109845588625483RH365711166.48    1 AC027052.3, AL109845.8, AL359879.4
S/G/Y/R/B/O NT_029223AL365187588868253          
S/G/Y/R/B/O NT_029223AL035411589577543RH678681166.58    1 AC025008.2, AC027052.3, AC120033.2, AC120033.2, AL035411.28
S/G/Y/R/B/O NT_029223AL035411589578113RH14008  12823.00  1 AC025008.2, AC027052.3, AL035411.28
S/G/Y/R/B/O NT_029223AL035411589578113RH500311166.48  1174.301 AC025008.2, AC027052.3, AL035411.28
S/G/Y/R/B/O NT_029223AL035411589590893RH362051162.05    1 AC025008.2, AC027052.3, AL035411.28
S/G/Y/R/B/O NT_029223AL035411589591193RH475741162.12    1 AC025008.2, AC027052.3, AL035411.28
S/G/Y/R/B/O NT_029223AL035411590129103RH808381117.64    2 AC025008.2, AL020995.14, AL035411.28
S/G/Y/R/B/O NT_029223AL035411590131773RH699041166.69    1 AL035411.28
S/G/Y/R/B/O NT_029223AL035411590370743WI-14224    1188.801 AC025008.2, AL035411.28
S/G/Y/R/B/O NT_029223AL035411590370743RH506911151.03    1 AC025008.2, AL035411.28
S/G/Y/R/B/O NT_029223AL035411590399933RH647301162.12    1 AC025008.2, AL035411.28
S/G/Y/R/B/O NT_029223AL450024590791943          
S/G/Y/R/B/O NT_029223AL136985591211113WI-4549    1194.801 AL136985.11
S/G/Y/R/B/O NT_029223AL136985591405533RH38097  12823.00  1 AL136985.11
S/G/Y/R/B/O NT_029223AL136985591631243RH684041165.46    1 AC024522.1, AL136985.11
S/G/Y/R/B/O NT_029223AL136985591652413RH685241166.58    1 AC024522.1, AL136985.11
S/G/Y/R/B/O NT_029223AL136985591981353RH1027841165.46    1 AL136985.11
S/G/Y/R/B/O NT_029223AL136985592028073D1S220    1199.301 AL136985.11
S/G/Y/R/B/O NT_029223AL136985592028073RH829  12828.00  1 AL136985.11
S/G/Y/R/B/O NT_029223AL136985592028073RH132901166.69    1 AL136985.11
S/G/Y/R/B/O NT_029223AL606762592454053RH14630  12828.00  1 AC080177.2, AL606762.6
S/G/Y/R/B/O NT_029223AL606762592454053RH498901166.69    1 AC080177.2, AL606762.6
S/G/Y/R/B/O NT_029223AL606762592454053SGC31372    1199.301 AC080177.2, AL606762.6
S/G/Y/R/B/O NT_029223AC105277592593573          
S/G/Y/R/B/O NT_029223AL592431594170983          
S/G/Y/R/B/O NT_029223AC093425595144663RH932331166.69    1 AC093425.2, AL138903.4
S/G/Y/R/B/O NT_029223AC093425596424773RH493461163.6512823.00  1 AC016336.3, AC025793.2, AC093425.2, AL596322.3
S/G/Y/R/B/O NT_029223AL596322596432333          
S/G/Y/R/B/O NT_029223AC093424596617181          
S/G/Y/R/B/O NT_029223AC069129598033391          
S/G/Y/R/B/O NT_029223AL390234598736073RH492051167.25    1 AC013610.3
S/G/Y/R/B/O NT_029223AL713859600537441RH642651166.58    1 AL713859.5
S/G/Y/R/B/O NT_029223AL713859600537441WI-18101    1199.301 AL713859.5
S/G/Y/R/B/O NT_029223AL713859600744281RH364801166.58    1 AL713859.5
S/G/Y/R/B/O NT_029223AL713859600744281RH766521166.69    1 AL713859.5
S/G/Y/R/B/O NT_029223 - RH1045481156.99    0  
S/G/Y/R/B/O NT_029223 - WI-15470    1181.001 AL353898.10
S/G/Y/R/B/O NT_029223 - RH359471156.58    1 AC092784.2, AL356112.3
S/G/Y/R/B/O NT_029223 - RH445791156.58    0  
S/G/Y/R/B/O NT_029223 - RH805151161.64    0