Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_004424

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004424	AL050343	51796846	3	RH42188	1	151.08			1	172.70	1	AL050343.17
S/G/Y/R/B/O	NT_004424	AL050343	51796846	3	RH29935			1	2567.00			1	AL050343.17
S/G/Y/R/B/O	NT_004424	AL050343	51838086	3	RH49965	1	152.02	1	2567.00	1	173.60	1	AL050343.17, AL359372.4, AL831767.1
S/G/Y/R/B/O	NT_004424	AL050343	51847181	3	RH11497	1	151.71					1	AL050343.17, AL359372.4, AL831767.1
S/G/Y/R/B/O	NT_004424	AL050343	51847511	3	RH93432	1	151.71					1	AL050343.17, AL831767.1
S/G/Y/R/B/O	NT_004424	AL050343	51848586	3	RH64471	1	151.49			1	172.70	1	AL050343.17, AL359372.4, AL831767.1
S/G/Y/R/B/O	NT_004424	AL050343	51848697	3	RH11811	1	151.49					1	AL050343.17, AL359372.4, AL831767.1
S/G/Y/R/B/O	NT_004424	AL050343	51860688	3	RH46354	1	150.97					1	AL050343.17, AL359372.4, AL831767.1
S/G/Y/R/B/O	NT_004424	AL050343	51888219	3	RH67105	1	151.08					1	AL050343.17, AL359372.4
S/G/Y/R/B/O	NT_004424	AL589663	51967270	3	RH38073			1	2567.00			1	AL359965.12, AL589663.18
S/G/Y/R/B/O	NT_004424	AL589663	51968501	3	RH18509	1	151.08					1	AL359965.12, AL589663.18
S/G/Y/R/B/O	NT_004424	AL589663	51970714	3	RH49719	1	151.08			1	172.70	1	AL359965.12, AL589663.18
S/G/Y/R/B/O	NT_004424	AL589663	51970714	3	RH47437	1	151.81					1	AL359965.12, AL589663.18
S/G/Y/R/B/O	NT_004424	AL589663	51977055	3	RH17852	1	151.08					1	AL359965.12, AL589663.18
S/G/Y/R/B/O	NT_004424	AL589663	51977171	3	RH36067	1	151.08					1	AL359965.12, AL589663.18
S/G/Y/R/B/O	NT_004424	AL445685	52079454	3	RH64473	1	151.81			1	172.70	1	AL355676.5, AL359965.12, AL445685.18
S/G/Y/R/B/O	NT_004424	AL445685	52079509	3	RH10495	1	151.08					1	AL355676.5, AL359965.12, AL445685.18
S/G/Y/R/B/O	NT_004424	AL445685	52091455	3	RH10496	1	151.08					1	AL355676.5, AL445685.18
S/G/Y/R/B/O	NT_004424	AL445685	52092377	3	RH25497	1	151.60					1	AC068177.1, AL355676.5, AL445685.18
S/G/Y/R/B/O	NT_004424	AL606761	52135417	3
S/G/Y/R/B/O	NT_004424	AL139156	52147482	3	RH63928	1	151.08			1	172.70	1	AL139156.11
S/G/Y/R/B/O	NT_004424	AL139156	52148400	3	RH93314	1	151.08					1	AL139156.11
S/G/Y/R/B/O	NT_004424	AC105754	52297794	3	RH48385	1	151.60					1	AC026909.2, AC105754.2
S/G/Y/R/B/O	NT_004424	AL513218	52411850	3	RH50474	1	151.60			1	172.70	1	AL138792.3, AL513218.27
S/G/Y/R/B/O	NT_004424	AL513218	52411861	3	RH64785	1	151.60	1	2582.00			1	AL138792.3, AL513218.27
S/G/Y/R/B/O	NT_004424	AL513218	52412795	3	RH15987	1	151.60					1	AL138792.3, AL513218.27
S/G/Y/R/B/O	NT_004424	AL513218	52412974	3	RH49913	1	151.60			1	172.70	1	AL138792.3, AL513218.27
S/G/Y/R/B/O	NT_004424	AL513218	52432153	3	RH70495	1	151.60					1	AL138792.3, AL513218.27
S/G/Y/R/B/O	NT_004424	AL513218	52432238	3	RH67528	1	151.60					1	AL138792.3, AL513218.27
S/G/Y/R/B/O	NT_004424	AL138849	52477248	3	RH104517	1	152.22	1	2577.00			1	AL138849.12
S/G/Y/R/B/O	NT_004424	AL138849	52479798	3	RH47320	1	151.60					1	AL138849.12
S/G/Y/R/B/O	NT_004424	AL138849	52496141	3	RH18388	1	151.49					1	AL138849.12
S/G/Y/R/B/O	NT_004424	AL138849	52585104	3	RH25404	1	151.81					1	AL138849.12
S/G/Y/R/B/O	NT_004424	AL138849	52585438	3	RH50467	1	151.60			1	172.70	1	AL138849.12
S/G/Y/R/B/O	NT_004424	AL591167	52601147	3
S/G/Y/R/B/O	NT_004424	AL356976	52667827	3	RH69375	1	151.60					1	AL356976.30
S/G/Y/R/B/O	NT_004424	AC099784	52831517	3	RH52296	11	65.72			11	65.20	3
S/G/Y/R/B/O	NT_004424	AC099784	52880772	3	RH64620	1	152.63					1	AC099784.2
S/G/Y/R/B/O	NT_004424	AC099784	52880809	3	RH15873	1	152.12					1	AC099784.2
S/G/Y/R/B/O	NT_004424	AC099784	52882357	3	RH67746	1	152.63					1	AC020781.4, AC099784.2, AL139255.9
S/G/Y/R/B/O	NT_004424	AL139255	52884516	3	RH69355	1	152.63					1	AC020781.4, AL139255.9
S/G/Y/R/B/O	NT_004424	AL139255	52886346	3	RH50508	1	152.63			1	173.90	1	AC020781.4, AL139255.9
S/G/Y/R/B/O	NT_004424	AL139255	52886410	3	RH16982	1	152.53					1	AC020781.4, AL139255.9
S/G/Y/R/B/O	NT_004424	AL139255	52894308	3	RH65483	1	152.74					1	AC020781.4, AL139255.9
S/G/Y/R/B/O	NT_004424	AC020781	52900463	1
S/G/Y/R/B/O	NT_004424	AC099677	52913939	1	RH1771			1	2595.00			1	AC020781.4, AC099677.1
S/G/Y/R/B/O	NT_004424	AC099677	52914053	1	RH67417	1	152.53					1	AC020781.4, AC099677.1
S/G/Y/R/B/O	NT_004424	AC099677	52925073	1	SGC34495					1	173.90	1	AC020781.4, AC099677.1
S/G/Y/R/B/O	NT_004424	AC099677	52925073	1	RH64400	1	153.75					1	AC020781.4, AC099677.1
S/G/Y/R/B/O	NT_004424	AC099677	52925073	1	RH70125	1	152.63					1	AC020781.4, AC099677.1

NT_004424 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004424	AC099677	52925212	1	RH26368	1	152.63					1	AC099677.1
S/G/Y/R/B/O	NT_004424	AC099677	53041185	1	RH36497	16	65.25					2	AC012180.5, AC099677.1, AL031722.20
S/G/Y/R/B/O	NT_004424	AL445183	53151692	3	RH79910	1	152.53					1	AC022728.4, AL358233.3, AL445183.19
S/G/Y/R/B/O	NT_004424	AL445183	53152196	3	RH69176	1	152.53					1	AC022728.4, AL358233.3, AL445183.19
S/G/Y/R/B/O	NT_004424	AL445183	53186128	3	RH68399	1	152.63					1	AC022728.4, AL358233.3, AL445183.19
S/G/Y/R/B/O	NT_004424	AL445183	53188244	3	RH94229	1	152.63					1	AC022728.4, AL358233.3, AL445183.19
S/G/Y/R/B/O	NT_004424	AL606760	53314274	3	RH99332	1	152.53					1	AC022728.4, AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53314438	3	RH64515	1	152.63					1	AC022728.4, AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53314958	3	RH64517	1	152.33					1	AC022728.4, AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53315294	3	RH64588	1	152.63					1	AC022728.4, AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53315478	3	RH14341			1	2616.00			1	AC022728.4, AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53330694	3	RH70798	1	152.63					1	AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53334274	3	RH91960	1	153.43					1	AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53343366	3	SGC32417					1	174.40	1	AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606760	53343366	3	RH12014	1	152.63					1	AC093564.1, AL606760.9
S/G/Y/R/B/O	NT_004424	AL606523	53367046	3
S/G/Y/R/B/O	NT_004424	AC093564	53373853	1
S/G/Y/R/B/O	NT_004424	AC119428	53440044	1	RH65636	1	152.63					1	AC093564.1, AC119428.1
S/G/Y/R/B/O	NT_004424	AC119428	53443568	1	RH29964			1	2628.00			1	AC093564.1
S/G/Y/R/B/O	NT_004424	AC119428	53465797	1	RH64412	1	740.49			1	910.40	1	AC119428.1, AL391984.1
S/G/Y/R/B/O	NT_004424	AC119428	53465801	1	RH18273	1	740.49					1	AC119428.1, AL391984.1
S/G/Y/R/B/O	NT_004424	AL365445	53526037	3	RH92923	1	152.63					1	AL365445.11
S/G/Y/R/B/O	NT_004424	AC105280	53619109	1	RH98910	1	152.63					1	AC105280.2
S/G/Y/R/B/O	NT_004424	AC069175	53638295	1
S/G/Y/R/B/O	NT_004424	AL603915	53856669	3
S/G/Y/R/B/O	NT_004424	AL591720	53867128	3
S/G/Y/R/B/O	NT_004424	AL049745	54060575	3	RH63815	1	153.35			1	173.90	1	AL049745.9
S/G/Y/R/B/O	NT_004424	AL049745	54060585	3	RH12074	1	152.63					1	AL049745.9
S/G/Y/R/B/O	NT_004424	AL049745	54082674	3	RH65551	1	152.74					1	AL049745.9
S/G/Y/R/B/O	NT_004424	AL391003	54146835	3	RH35802	1	152.63					1	AL391003.15
S/G/Y/R/B/O	NT_004424	AL391003	54146851	3	RH80519	1	152.63					1	AL391003.15
S/G/Y/R/B/O	NT_004424	AL031427	54164040	3	RH42684	1	152.63	1	2644.00			1	AL031427.15
S/G/Y/R/B/O	NT_004424	AL031427	54205099	3	RH63833	1	152.63	1	2644.00	1	174.30	1	AL031427.15
S/G/Y/R/B/O	NT_004424	AL031427	54205942	3	RH80009	1	150.97					1	AL031427.15
S/G/Y/R/B/O	NT_004424	AL031427	54223198	3	RH45204	1	152.63					1	AL031427.15
S/G/Y/R/B/O	NT_004424	AL031427	54262849	3	RH1187			1	2639.00			1	AL031427.15
S/G/Y/R/B/O	NT_004424	AL353898	54321856	3	RH11934	1	152.63					1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL353898	54325043	3	RH64752	1	152.63					1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL353898	54327149	3	RH50081	1	152.81					1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL353898	54327149	3	WI-15470					1	181.00	1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL353898	54339631	3	RH27177	1	152.63					1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL353898	54339668	3	RH50796	1	152.63					1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL353898	54339668	3	SGC33632					1	177.60	1	AL353898.10
S/G/Y/R/B/O	NT_004424	AL161915	54398184	3
S/G/Y/R/B/O	NT_004424	AL357673	54464748	3	RH69671	1	152.63					1	AL357673.12
S/G/Y/R/B/O	NT_004424	AL357673	54467432	3	RH70487	1	152.63					1	AL357673.12
S/G/Y/R/B/O	NT_004424	AL161644	54513280	3	RH41897	1	154.95					1	AL161644.6
S/G/Y/R/B/O	NT_004424	AL161644	54520638	3	RH36720	1	153.35					1	AL161644.6
S/G/Y/R/B/O	NT_004424	AL161644	54521473	3	RH16889	1	152.63					1	AL161644.6
S/G/Y/R/B/O	NT_004424	AL161644	54521763	3	RH64200	1	152.02			1	173.90	1	AL161644.6

NT_004424 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004424	AL354778	54593071	3
S/G/Y/R/B/O	NT_004424	AL035415	54662970	3	RH77927	1	152.63					1	AL035415.22
S/G/Y/R/B/O	NT_004424	AL035415	54668044	3	RH70403	1	152.63					1	AL035415.22
S/G/Y/R/B/O	NT_004424	AL035415	54673298	3	RH69813	1	152.63					1	AL035415.22
S/G/Y/R/B/O	NT_004424	AL035415	54681764	3	SGC32284					1	173.60	1	AL035415.22
S/G/Y/R/B/O	NT_004424	AC099796	54763123	1
S/G/Y/R/B/O	NT_004424		-		RH25760	1	153.35					0	AC099784.2
S/G/Y/R/B/O	NT_004424		-		RH33691			1	2590.00			1	AL359255.12, AL391001.12
S/G/Y/R/B/O	NT_004424		-		RH26507	1	152.63					0
S/G/Y/R/B/O	NT_004424		-		RH36575	1	153.25					0
S/G/Y/R/B/O	NT_004424		-		RH64395	1	152.02					2	AC008784.7, AC025777.5, AC035146.5, AL356212.13
S/G/Y/R/B/O	NT_004424		-		RH66217	1	152.74					0