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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004434
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004434AL5922841431808873          
S/G/Y/R/B/O NT_004434AC0269001433516561          
S/G/Y/R/B/O NT_004434AL1387961433898123RH33685  15879.00  2 AL162261.8, AL356581.4
S/G/Y/R/B/O NT_004434AL1387961434044543RH14645  15656.00  2 AC026900.3, AC027209.2, AL138796.6, AL390296.8, AL592491.7
S/G/Y/R/B/O NT_004434AL1387961434044543RH505001535.44    2 AC026900.3, AC027209.2, AL138796.6, AL390296.8, AL592491.7
S/G/Y/R/B/O NT_004434AL1387961434044543SGC31941    1627.102 AC026900.3, AC027209.2, AL138796.6, AL390296.8, AL592491.7
S/G/Y/R/B/O NT_004434AL1387961434435203WI-13414    1509.001 AC026900.3, AC027209.2, AL138796.6, AL390296.8, AL592491.7
S/G/Y/R/B/O NT_004434AL1387961434435203RH74590  15646.00  1 AC027209.2
S/G/Y/R/B/O NT_004434AL1387961434512103RH645641535.89    2 AC026900.3, AL138796.6, AL139152.7, AL592491.7
S/G/Y/R/B/O NT_004434AL1387961434526053RH183581537.26    1 AC026900.3, AL138796.6, AL592491.7
S/G/Y/R/B/O NT_004434AL1387961434556413RH925351535.89    2 AL138796.6, AL139152.7, AL590452.12, AL592491.7
S/G/Y/R/B/O NT_004434AL5904521434889533RH646831533.74    1 AL590452.12, AL592491.7
S/G/Y/R/B/O NT_004434AL5904521435766763RH1284  15635.00  1 AC016372.2, AL590452.12
S/G/Y/R/B/O NT_004434AL5904521435834303WI-6908    1505.801 AC016372.2, AC018405.3, AL390735.9, AL590452.12
S/G/Y/R/B/O NT_004434AL1387911436119753          
S/G/Y/R/B/O NT_004434AL3597581436880923RH694821536.12    1 AL359758.14
S/G/Y/R/B/O NT_004434AL3597581436882053RH446221535.89    1 AL359758.14
S/G/Y/R/B/O NT_004434AL0497151437255483          
S/G/Y/R/B/O NT_004434AL5923071438972251RH33685  15879.00  2 AL162261.8, AL356581.4
S/G/Y/R/B/O NT_004434AL3555051439120343          
S/G/Y/R/B/O NT_004434AL1388421439375933RH642691530.81  1608.401 AL138842.15, AL359093.9
S/G/Y/R/B/O NT_004434AL1388421439375933RH175101509.83    1 AL138842.15, AL359093.9
S/G/Y/R/B/O NT_004434AL1388421439377363RH108071509.83    1 AL138842.15, AL359093.9
S/G/Y/R/B/O NT_004434AL1388421439378143RH167621509.83    1 AL138842.15, AL359093.9
S/G/Y/R/B/O NT_004434AL1388421439592523RH1045081531.99    1 AL138842.15, AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439617883RH499641532.55  1615.601 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439618353RH128781509.83    1 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439618753RH645811532.55    1 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439623183RH701401532.55    1 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439624583RH249461532.55    1 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439627483RH507721515.33  1611.001 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439627923RH639521530.18  1615.501 AL160282.18, AL359093.9
S/G/Y/R/B/O NT_004434AL1602821439766903RH496571532.55  1615.501 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821439767633RH644391531.99  1611.701 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821439957673RH711341511.7715882.001608.701 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440143513RH1026631519.07    1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440316163RH800391510.30    2 AL122057.4, AL132778.6, AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440328863RH265951519.38    1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440336373RH508281515.77  1609.201 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440336383RH474981512.23    1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440338513WI-12966    1601.701 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440338873RH501361516.19  1609.601 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440438373RH507581516.19  1609.601 AC107240.1, AC107240.1, AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440523723RH493211523.99    1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821440639583RH684251512.23    1 AC107240.1, AL160282.18
S/G/Y/R/B/O NT_004434AL1602821441065483RH32291  15875.00  1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821441066553RH505551517.79  1607.101 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821441067193RH1033471520.74    1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821441068163RH798141510.20    1 AL160282.18
S/G/Y/R/B/O NT_004434AL1602821441068673RH681191519.07    1 AL160282.18


  NT_004434 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004434AL1602821441174323RH646841512.23    1 AL160282.18
S/G/Y/R/B/O NT_004434AL3907251441509521RH423251512.23  1603.001 AC107240.1, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251441509521RH407  15863.00  1 AC107240.1, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251441816251RH1041111514.25    1 AC022965.2, AC107240.1, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251442074151RH654081519.27    1 AC022965.2, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251442085311RH497171512.23  1609.601 AC022965.2, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251442161371RH788351518.96    1 AC022965.2, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251442227321RH475561521.87    1 AC022965.2, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AL3907251442762141RH665021532.84    2 AC013673.2, AC022965.2, AL365221.6, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AC0229651442103851RH694781512.23    1 AC022965.2, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AC0229651442838371RH639041532.84  1613.102 AC013673.2, AC013673.2, AC022965.2, AL365221.6, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AC0229651442840271RH359781512.23    1 AC022965.2, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AC0229651442847461RH498321509.73  1611.502 AC022965.2, AL365221.6, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AC0229651442847461RH183001517.70    2 AC022965.2, AL365221.6, AL390725.14, AL611965.6
S/G/Y/R/B/O NT_004434AC0229651443018511RH658651531.77    2 AC022965.2, AL365221.6
S/G/Y/R/B/O NT_004434AC0229651443245691RH660271532.84    2 AC022965.2, AL365221.6, AL611965.6
S/G/Y/R/B/O NT_004434 - RH128551512.23    0  
S/G/Y/R/B/O NT_004434 - RH1289  15645.00  2 AL161736.32, AL358175.18
S/G/Y/R/B/O NT_004434 - WI-18059    1491.201 AL391476.20
S/G/Y/R/B/O NT_004434 - RH981741532.55    0  
S/G/Y/R/B/O NT_004434 - RH32618  15646.00  1 AL357493.5
S/G/Y/R/B/O NT_004434 - SGC32297    1517.001 AL357493.5, AL591493.12
S/G/Y/R/B/O NT_004434 - WI-8997    1570.401 AL591493.12
S/G/Y/R/B/O NT_004434 - SGC30600    1588.101 AL078463.11, AL357493.5, AL357493.5
S/G/Y/R/B/O NT_004434 - WI-17395    1608.601 AC015459.2, AC024468.3, AL592207.9, AL683889.14
S/G/Y/R/B/O NT_004434 - SGC35000    1618.703 AC024468.3, AL355866.2, AL592207.9, AL683889.14