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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_028054
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL35669354994972RH104479123.89    1 AC026968.3, AL356693.35, AL831732.1
S/G/Y/R/B/O NT_028054AL35669354996692RH10101125.38    1 AC026968.3, AL356693.35, AL831732.1
S/G/Y/R/B/O NT_028054AL35626155201803          
S/G/Y/R/B/O NT_028054AL03540657226403RH68900123.89    1 AL035406.25
S/G/Y/R/B/O NT_028054AL03540657373843RH12592125.38    1 AL035406.25, AL589792.1
S/G/Y/R/B/O NT_028054AL03540657418343RH50089123.89  123.601 AL035406.25, AL589792.1
S/G/Y/R/B/O NT_028054AL03184758227163RH1230  1237.00  1 AL031847.17, AL589792.1
S/G/Y/R/B/O NT_028054AL03184758228053RH64486123.89    1 AL031847.17, AL589792.1
S/G/Y/R/B/O NT_028054AL03184758231343RH1348  32819.00  2 AC074033.18, AC114305.1, AL031847.17, AL589792.1
S/G/Y/R/B/O NT_028054AL03184758231943RH8624  32819.00  2 AC074033.18, AC114305.1, AL031847.17, AL589792.1
S/G/Y/R/B/O NT_028054AL03184758570523RH69711125.38    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184758573113RH101937125.48    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184758578803RH12746125.38    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184758601783WI-13857    123.601 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184758601783RH6433210.69    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184758612753RH64691126.29    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184758662313RH49244123.891202.00  1 AL031847.17
S/G/Y/R/B/O NT_028054AL03184758840353RH11867123.89    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184759009593RH70714125.38    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184759010263RH9168512.39    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_028054AL03184759360623RH42376123.89  123.601 AL031847.17
S/G/Y/R/B/O NT_028054AL03184859465513          
S/G/Y/R/B/O NT_028054AL15821760967283RH49985123.89  123.601 AL158217.24
S/G/Y/R/B/O NT_028054AL15821760972433RH75593130.33    1 AL158217.24
S/G/Y/R/B/O NT_028054AL15821761028233RH78804127.00    1 AL158217.24
S/G/Y/R/B/O NT_028054AL15821761130593RH47727123.89    1 AL158217.24
S/G/Y/R/B/O NT_028054AL59186661580333RH68223125.38    1 AC062024.2, AL591866.13
S/G/Y/R/B/O NT_028054AL59186661580573RH26086123.89    1 AC062024.2, AL591866.13
S/G/Y/R/B/O NT_028054AL59186662153623GCT15G02    128.301 AC062024.2, AC108123.1, AL591866.13
S/G/Y/R/B/O NT_028054AL59186662256343RH78576127.20    1 AC062024.2, AC108123.1, AL031447.4, AL591866.13
S/G/Y/R/B/O NT_028054AL59186662261563RH71462127.30    1 AC062024.2, AC108123.1, AL031447.4, AL591866.13
S/G/Y/R/B/O NT_028054AL59186662274123RH64576127.00    1 AC062024.2, AC108123.1, AL031447.4, AL591866.13
S/G/Y/R/B/O NT_028054AL59186662274403RH64806127.30    1 AC062024.2, AC108123.1, AL031447.4, AL591866.13
S/G/Y/R/B/O NT_028054AL59186662274843RH24947127.00    1 AC062024.2, AC108123.1, AL031447.4, AL591866.13
S/G/Y/R/B/O NT_028054AL03144762603653RH13732  1198.00  1 AC062024.2, AC108123.1, AL031447.4
S/G/Y/R/B/O NT_028054AL03144762708543RH49941127.10  130.401 AC062024.2, AC108123.1, AL031447.4
S/G/Y/R/B/O NT_028054AL03144762709073RH67207127.30    1 AC062024.2, AC108123.1, AL031447.4
S/G/Y/R/B/O NT_028054AL03144762891443RH46494127.30    1 AC062024.2, AC108123.1, AL031447.4
S/G/Y/R/B/O NT_028054AL15917763375723          
S/G/Y/R/B/O NT_028054AL59116363454843          
S/G/Y/R/B/O NT_028054AL59012865246163RH102988125.38    1 AL391218.9, AL590128.11
S/G/Y/R/B/O NT_028054AL59012865386153D1S214    121.201 AL391218.9, AL590128.11
S/G/Y/R/B/O NT_028054AL59012865386153RH13272125.381285.00  1 AL391218.9, AL590128.11
S/G/Y/R/B/O NT_028054AL51233066176963          
S/G/Y/R/B/O NT_028054AL68381266867761RH98600125.38    1 AL683812.10
S/G/Y/R/B/O NT_028054Z9763567730613RH63776126.29  125.801 AL683812.10, Z97635.10
S/G/Y/R/B/O NT_028054Z9805268343373RH49295126.291290.00  1 Z98052.1
S/G/Y/R/B/O NT_028054Z9798769185183RH49315127.20    1 Z97987.1
S/G/Y/R/B/O NT_028054Z9798770195093CHLC.GATA4H04.128    134.901 AL034378.3, Z97987.1
S/G/Y/R/B/O NT_028054AL36519470686133          


  NT_028054 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL15771671322613          
S/G/Y/R/B/O NT_028054AC07348271926721          
S/G/Y/R/B/O NT_028054AL59621071959881          
S/G/Y/R/B/O NT_028054AL35988173008873          
S/G/Y/R/B/O NT_028054Z9888473933883RH64280123.89  121.201 Z98884.11
S/G/Y/R/B/O NT_028054Z9888474096043RH4446812.39    1 AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474103243RH36013131.16    1 AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474229273RH14641  1349.00121.201 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474230253RH50106123.89  121.201 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474525573RH78631132.73    1 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474557053RH45812130.46    1 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474860073RH64640132.73    1 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474868403RH93635132.73    1 AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474868683RH50128132.73  125.901 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054Z9888474869633RH64808131.72    1 AC025220.2, AL365441.6, Z98884.11
S/G/Y/R/B/O NT_028054AL00918375583063RH91876132.73    1 AL009183.10, AL512402.10
S/G/Y/R/B/O NT_028054AL00918375623493RH64464131.261346.00  1 AC025220.2, AC025225.3, AL009183.10, AL512402.10
S/G/Y/R/B/O NT_028054AL00918375623493SGC35316    12.001 AC025220.2, AC025225.3, AL009183.10, AL512402.10
S/G/Y/R/B/O NT_028054AL00918375627283RH17617132.73    1 AL009183.10, AL512402.10
S/G/Y/R/B/O NT_028054AL00918375627533RH64183132.73    1 AL009183.10, AL512402.10
S/G/Y/R/B/O NT_028054AL03441776271253RH50179132.73  124.902  
S/G/Y/R/B/O NT_028054AL03441776538363RH66928132.73    1 AC025225.3, AL034417.14, AL512402.10
S/G/Y/R/B/O NT_028054AL03441776551593RH92580132.73    1 AL034417.14, AL512402.10
S/G/Y/R/B/O NT_028054AL03441776589783WI-17925    124.901 AC025225.3, AL034417.14, AL512402.10
S/G/Y/R/B/O NT_028054AL03441776589783RH6440514.18    1 AC025225.3, AL034417.14, AL512402.10
S/G/Y/R/B/O NT_028054AL03441776627453RH67153132.73    1 AL034417.14
S/G/Y/R/B/O NT_028054AL67220177154633          
S/G/Y/R/B/O NT_028054AL35887677590073          
S/G/Y/R/B/O NT_028054AL35607279859703RH36035132.83    1 AC024508.4, AC034143.3, AL356072.21
S/G/Y/R/B/O NT_028054AL35607279945163RH10121132.83    1 AC016049.2, AC024508.4, AC034143.3, AC079745.1, AL356072.21
S/G/Y/R/B/O NT_028054AL35607279956593RH50665131.201390.00125.901 AC016049.2, AC024508.4, AC034143.3, AC079745.1, AL356072.21
S/G/Y/R/B/O NT_028054AL35607279965373RH44393132.83    1 AC016049.2, AC024508.4, AC034143.3, AC079745.1, AL356072.21
S/G/Y/R/B/O NT_028054AL35607280406153RH68112132.73    1 AC016049.2, AC079745.1, AL356072.21
S/G/Y/R/B/O NT_028054AL09685580533651RH64274132.73  124.901 AC016049.2, AC034143.3, AL096855.48
S/G/Y/R/B/O NT_028054AL09685580533651RH68650132.73    1 AC016049.2, AC034143.3, AL096855.48
S/G/Y/R/B/O NT_028054AL09685580767811RH103328132.73    1 AC016049.2, AC034143.3, AL096855.48
S/G/Y/R/B/O NT_028054AL09685584330291RH64410132.73  124.901 AC026160.2, AL096855.48
S/G/Y/R/B/O NT_028054AL09685585010011CHLC.GGAT3G04    11.801 AL096855.48
S/G/Y/R/B/O NT_028054AC01604981670491RH603505552.16  5472.502 AC008728.7, AC016049.2, AC016118.4
S/G/Y/R/B/O NT_028054AC01604981676091RH807085553.11    2 AC008728.7, AC016049.2, AC016118.4
S/G/Y/R/B/O NT_028054AC01604981681861RH658545553.53    2 AC008728.7, AC016049.2, AC016118.4
S/G/Y/R/B/O NT_028054AL35755282216851RH46183131.72    2 AC115093.4, AL357552.21
S/G/Y/R/B/O NT_028054AL35755282475641RH65579132.73    1 AC025240.4, AC026160.2, AL357552.21
S/G/Y/R/B/O NT_028054AC02616083243601          
S/G/Y/R/B/O NT_028054AL35771383735343RH64522131.26    1 AC026160.2, AL357713.11
S/G/Y/R/B/O NT_028054AL35771384125763RH64561132.73    1 AC026160.2, AL357713.11
S/G/Y/R/B/O NT_028054AL35493085085343          
S/G/Y/R/B/O NT_028054AL13941585413573RH1906  1452.00  3 AC025240.4, AC115093.4, AL139415.10
S/G/Y/R/B/O NT_028054AL13941585415923RH93736132.73    2 AC025240.4, AC115093.4, AL139415.10
S/G/Y/R/B/O NT_028054AL13941585550013RH11129132.73    1 AC025240.4, AL139415.10


  NT_028054 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL13941585599303RH104034131.16    1 AC025240.4, AL139415.10
S/G/Y/R/B/O NT_028054AL13941586550873RH76224132.73    1 AL139415.10, AL356306.3
S/G/Y/R/B/O NT_028054AL15804887173813RH64706131.26    1 AL158048.35, AL356306.3
S/G/Y/R/B/O NT_028054AL15804887173833RH69141133.68    1 AL158048.35, AL356306.3
S/G/Y/R/B/O NT_028054AL15804887176213RH70560132.73    1 AL158048.35, AL356306.3
S/G/Y/R/B/O NT_028054AL15804887178813RH80220132.83    1 AL158048.35, AL356306.3
S/G/Y/R/B/O NT_028054AL15804887208793RH1229  1436.00  1 AL158048.35
S/G/Y/R/B/O NT_028054AL15804887209273RH64477131.68    1 AL158048.35, AL356306.3
S/G/Y/R/B/O NT_028054AL15804887497603RH11119132.73    1 AL158048.35
S/G/Y/R/B/O NT_028054AL15804887807903RH102826132.73    1 AL158048.35
S/G/Y/R/B/O NT_028054AL15804887816083RH70291132.73    1 AL158048.35
S/G/Y/R/B/O NT_028054AL59116688134733          
S/G/Y/R/B/O NT_028054Z9804489215763RH50314131.09  124.901 Z98044.13
S/G/Y/R/B/O NT_028054Z9804489477893RH12665132.10    1 Z98044.13
S/G/Y/R/B/O NT_028054Z9804489482943RH67670131.26    1 Z98044.13
S/G/Y/R/B/O NT_028054AL00873490291143RH2403132.83  131.201 AL008734.10
S/G/Y/R/B/O NT_028054AL00873490291143RH29960  1443.00  1 AL008734.10
S/G/Y/R/B/O NT_028054AL35825290492193RH2107  1439.00  1 AL358252.13
S/G/Y/R/B/O NT_028054AL35825290495623RH64462134.83    1 AL358252.13
S/G/Y/R/B/O NT_028054AL35825290495623WI-14195    149.301 AL358252.13
S/G/Y/R/B/O NT_028054 - RH104520133.57    1 AL357140.31
S/G/Y/R/B/O NT_028054 - RH14428  1209.00  1 AL691523.2
S/G/Y/R/B/O NT_028054 - WI-4221    121.600  
S/G/Y/R/B/O NT_028054 - RH104565132.73    0  
S/G/Y/R/B/O NT_028054 - RH30654  1271.00  1 AL359086.9, Z99291.1
S/G/Y/R/B/O NT_028054 - WI-16324    125.701 AL691449.10
S/G/Y/R/B/O NT_028054 - RH12587125.38    0  
S/G/Y/R/B/O NT_028054 - RH34644  1195.00  0  
S/G/Y/R/B/O NT_028054 - D1S450    131.200  
S/G/Y/R/B/O NT_028054 - RH27217131.78    1 AC053474.1, AL033525.10
S/G/Y/R/B/O NT_028054 - SGC32104    131.301 AL663100.12
S/G/Y/R/B/O NT_028054 - RH64314131.89    1 AL109811.40
S/G/Y/R/B/O NT_028054 - WI-8986    139.701 AL391730.13
S/G/Y/R/B/O NT_028054 - RH63871132.73    1 AL691449.10
S/G/Y/R/B/O NT_028054 - RH64448131.89    1 AL031296.1
S/G/Y/R/B/O NT_028054 - RH64510132.83    0  
S/G/Y/R/B/O NT_028054 - RH67842132.73    0  
S/G/Y/R/B/O NT_028054 - RH76593127.10    0